Publications

In this page, I will try to maintain a list of my publications in a presentive index. The formal category-based list would be found in my CV (or even on Google Scholar).

Computational Biomechanics and Tissue Engineering

Finite Element Method, Materials Modeling

• M. Barzegari, D. Mei, S.V. Lamaka, L. Geris, “Computational modeling of degradation process of biodegradable magnesium biomaterials”, Corrosion Science, Vol. 190, pp. 109674, 2021

High-Performance Computing

• M. Barzegari, L. Geris, “Highly scalable numerical simulation of coupled reaction–diffusion systems with moving interfaces”, The International Journal of High Performance Computing Applications, 2021

Finite Element Method, Tissue Growth Modeling

• D. Van Hede, B. Liang, S. Anania, M. Barzegari, B. Verlee, G. Nolens, J. Pirson, L. Geris, F. Lambert, “3D-Printed Synthetic Hydroxyapatite Scaffold With In Silico Optimized Macrostructure Enhances Bone Formation In Vivo”, Advanced Functional Materials, 2021

Finite Element Method, Fluid-Structure Interaction

• M. Barzegari, B. Vahidi, M. R. Safarinejad, M. Ebad, “A computational analysis of the effect of supporting organs on predicted vesical pressure in stress urinary incontinence”, Medical & Biological Engineering & Computing, Vol. 58, No. 5, pp. 1079-1089, 2020

• M. Barzegari, B. Vahidi, M. R. Safarinejad, “A Clinical and Finite Elements Study of Stress Urinary Incontinence in Women Using Fluid-Structure Interactions”, arXiv Preprint

• M. Barzegari, B. Vahidi, M. R. Safarinejad, “Investigating Stress Urinary Incontinence in Women Using Computational Methods and Clinical Data”, Journal of Modares Mechanical Engineering, Vol. 17, No. 5, pp. 417-427, 2017 [Persian]

• M. Barzegari, B. Vahidi, M. R. Safarinejad, “Computational Simulation of Stress Urinary Incontinence using Fluid-Structure Interaction Analysis”, 25th International Conference on Mechanical Engineering, Tehran, Iran, 2017 [Persian]

Software and Education

• M. Barzegari, L. Geris, “BioDeg: A finite element software for the simulation of the corrosion and biodegradation process in metallic biomaterials”, Journal of Open Source Software, Vol. 7, No. 74, 2022

• M. Barzegari, L. Geris, “An open source crash course on parameter estimation of computational models using a Bayesian optimization approach”, Journal of Open Source Education, Vol. 4, No. 40, 2021

• F. Perez Boerema, M. Barzegari, L. Geris, “A flexible and easy-to-use open-source tool for designing functionally graded 3D porous structures”, Virtual And Physical Prototyping, 2022

• J. Barrasa Fano, A. Shapeti, A. Jorge Peñas, M. Barzegari, J.A. Sanz-Herrera, H. Van Oosterwyck, “TFMLAB: a MATLAB toolbox for 4D Traction Force Microscopy”, SoftwareX, Vol. 15, pp. 100723, 2021

Computational Fluid Dynamics

Lattice Boltzmann Method

• M. Barzegari, H. Bayani, S. M. H. Mirbagheri, H. Shetabivash, “Multiphase Aluminum A356 Foam Formation Process Simulation Using Lattice Boltzmann Method”, Journal of Materials Research and Technology, Vol. 8, No. 1, pp. 1258-1266, 2019 (complete version is available on arXiv)

• M. Barzegari, H. Bayani, S. M. H. Mirbagheri, “A Criterion for Bubble Merging in Liquid Metal: Computational and Experimental Study”, arXiv Preprint

• M. Barzegari, H. Bayani, S. M. H. Mirbagheri, “Computational and Experimental Investigation of Air Bubbles Coalescence in Metal Melts”, 25th International Conference on Mechanical Engineering, Tehran, Iran, 2017 [Persian]

Finite Difference Method, Cellular Automata

• H. Bayani, S. M. H. Mirbagheri, M. Barzegari, and S. Firoozi, “Simulation of Unconstrained Solidification of A356 Aluminium Alloy on Distribution of Micro/Macro Shrinkage”, Journal of Materials Research and Technology, Vol. 3, No. 1, pp. 55-70, 2014

• S. M. H. Mirbagheri, H. Bayani, M. Barzegari, and S. Firoozi, “Simulation of Liquid Flow Permeability for Dendritic Structures during Solidification Process”, Computational Fluid Dynamics Technologies and Applications, Intec, 2011

• S. M. H. Mirbagheri, H. Bayani, M. Barzegari, “Micro Shrinkages Simulation in Mushy Zone by Permeability Calculation”, Journal of Iranian Foundrymen’s Society, Vol. 102, pp. 42-50, 2013 [Persian]

Finite Volume Method

• M. Barzegari, S. M. H. Mirbagheri, “Assessment of the Slope and Cross-Section of In-Gate on the Pressure and Flow Pattern Using Finite Volume Method”, Journal of Metallurgical and Materials Engineering, Vol. 22, No. 2, pp. 21-36, 2011 [Persian]

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Machine Learning and Internet of Things (IoT)

Theory of Machine Learning

• F. Firouzi, B. Farahani, F. Ye, M. Barzegari, “Machine Learning for IoT”, in Intelligent Internet of Things, Springer International Publishing, pp. 243–313, 2020

Deep Learning, Convolutional Neural Networks

• F. Firouzi, B. Farahani, E. Panahi, M. Barzegari, “Task Offloading for Edge-Fog-Cloud Interplay in the Healthcare Internet of Things (IoT)”, Proceedings of the International Conference on Omni-Layer Intelligent Systems, 2021

• F. Firouzi, B. Farahani, M. Barzegari, M. Daneshmand, “AI-Driven Data Monetization: The other Face of Data in IoT-based Smart and Connected Health”, IEEE Internet of Things Journal, 2020

Reinforcement Learning, Shape Optimization

• H. Keramati, F. Hamdullahpur, M. Barzegari, “Deep reinforcement learning for heat exchanger shape optimization”, International Journal Of Heat And Mass Transfer, 2022

Artificial Neural Networks, Support Vector Machines

• B. Farahani, M. Barzegari, F. Shams, K. A. Shaik, “Towards collaborative intelligent IoT eHealth: From device to fog, and cloud”, Microprocessors and Microsystems, vol. 72, 102938, 2020 *, pp. 134-140, Crete, Greece, 2019

• B. Farahani, M. Barzegari, F. Shams, “Towards Collaborative Machine Learning Driven Healthcare Internet of Things”, Proceedings of the International Conference on Omni-Layer Intelligent Systems, pp. 134-140, Crete, Greece, 2019

• M. Barzegari, B. Vahidi, M. R. Safarinejad, M. Hashemipour, “Pathological Analysis of Stress Urinary Incontinence in Females using Artificial Neural Networks”, arXiv Preprint

Image Processing, Raspberry Pi

• S. Gholami, A. Danayi, A. Rezaee, M. Barzegari, “Embedded Systems and the Challenge of Complex Computing in Internet of Things”, 1st International Conference on Internet of Things, Applications and Infrastructure, Isfahan, Iran, 2017 [Persian]